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Salvatore Mungal 

Last updated:  05/01/15

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Raleigh, NC  27613
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RESUME

  

Resume Headline: Salvatore Mungal - Project Manager/Bioinformatics Programmer

Resume Value: d3967pshb9t6dnzc   

  

 

Salvatore Mungal                                                                                                                         smungal@gmail.com

(919) 434-6585

Salvatore Mungal

8016 Laurel Mountain Road 

Raleigh, NC 27613-8818 

 

 

 

SUMMARY

 

Over Fifteen years of experience in Academic and Commercial Biomedicine Informatics and QA: -

 

·               Over three years experience in C++, Visual C++ (3+ years MFC) and 7+ years in Java.

·               Over five years experience in building Web applications using JSP, Java,/EJB and databases.

·               Over 8 years experience with interoperability, data standards and the semantic domain.

·               Solid Oracle back-end programming experience in areas such as data reporting, SQL Development, Oracle performance tuning, and other DBA functions.

·               Software development in CUDA, VC++, and JAVA with Oracle, IBM DB2 and MySQL databases.

·               Proficient in using COM/DCOM technology to develop distributed database system applications.

·               Knowledgeable with Bioinformatics, Pharmaceutical, Research, Medical, Biostatistics, Internet and Financial industries.

 

An excellent leader, project manager, data modeler/architect, business analyst, quality assurance testing, programmer and analyst with a strong background in bioinformatics, data standards (HL7) and the semantic domain who is highly motivated with initiative and good communication skills. Experience managing patient data under HIPAA confidentially regulations with Quality Assurance/Validation. Ability to develop expertise in new areas in extremely short periods. Strong data modeling/mapping, data analysis, writing and presentation skills.

 

Technical:

 

Database Products: Oracle 7/8/9i/10G client/server PL/SQL (ODBC), MySQL, MS Access (DAO), Informix, IBM DB2

Database Languages:PL/SQL 8.0/9i, SQL*Plus 8.0/9i, MySQL

Languages/IDEs:C, CUDA, C#, C++, MS Visual C++(MFC), SAS, R, XML, J2EE Java, JUnit, Perl, Python, CodeWarrior, Borland’s JBuilder, Eclipse and Delphi, UML, RDF, OWL

Web:               MS Internet Server, Tomcat/Apache Server, VBScript, JavaScript, ASP, JSP, CSS, PhotoShop, DHTML, XForms, XSLT, Struts, Grid

Hardware:Sun, IBM PCs & Compatibles

Operating Systems/Env:Unix, Linux, Korn Shell Scripting, Sun Sparc/Solaris, DOS, PVCS, Windows NT/2000/XP/7, Weblogic, WebSphere, Web Services, .NET, GIT, Next Generation Sequencing, Bioconductor, Hadoop

Standards:ISO/IEC 11179, ISO 21090, HL7, CDISC, BRIDG

 

EDUCATION

 

Certificate in Programming - BS core courses in Computer Science at NCSU.

MS - Oral Biology and Pathology. Stony Brook University.

BS - Biochemistry. Stony Brook University.

CERTIFICATION and TRAINING

ST511 and 512. Statistical Programming for the Life Sciences (SAS). NCSU. 1996.

Object Oriented Programming, The Learning Tree, Washington, DC. 2000.

Java Programming, The Learning Tree, Washington, DC. 2000.

Object Oriented Design, Together/J, NC. 2000.

Oracle 9i Database Administrator, Wake Tech, NC. 2000

C# Object Oriented Programming on .NET, Developer Mentor, NC. 2003

Base SAS I and II Programming at TechEngage, NC. 2003.

ASP .NET Programming using C# and VB, Developer Mentor, NC. 2004

 

Honors and Service

 

1991Patent awarded - Invention No. R-899, “In Vitro Assay for Human Papilloma DNA Replication”

(2004-2010) Funded participant for multiple workspaces within NCI’s caBIG initiative

2006Mentoring Award for NCI’s caBIGTM VCDE (Vocabulary/Common Data Elements) workspace

2006Excellence Award for work in the caBIG program

2007Excellence in Mentoring Award as a guide to mentors for NCI’s caBIGTM VCDE workspace

2007Outstanding Achievement Award as a caBIGTM team member from the Duke Comprehensive Cancer Center

2008Excellence in Mentoring Award as a guide to mentors for NCI’s caBIGTM VCDE workspace

2008Change Agent Award as a member of the Analytical Services Best Practice Working Group for NCI’s caBIGTM ICR workspace

2010Duke Teamwork Awards: Data Management Solutions Team – Clinical Data Collection Gurus

(2010-2011) Funded by Duke Clinical Research Institute (DCRI) to architect and implement the Cardiovascular Data Standards

2011Nominated Member: Food and Drug Administration (FDA) Clinical Trials Repository Expert Advisory Panel

2011Funded grant: Co-PI with Dr. William Barry, “Integration of Proteomics and Gene Expression Profiling: a rigorous and systematic approach to biomarker development in high-throughput biotechnologies.”

2011 -Chairman of the Data Standards Committee (REDCap)

2012 - Reviewer for AMIA

 

Other Interest

 

(2005 – Present) Assistant Scoutmaster with BSA Troop 350

(2008 – 2009)President of Council for Entrepreneurial Development (CED) Visioneers Toastmasters Club

(2009 – 2010)President of Centennial Visioneers Toastmasters Club

 

Book Chapters:

 

Lin, S., S. A. Mungal, R. Haney, E. F. Patz, and P. McConnell (2006), Advanced Data Mining Technologies in Bioinformatics, In Hsu, H (Ed.), Proteomics with Mass Spectrometry. Idea Group Inc. pp. 5.85-5.101

 

Manuscript in Preparation:

 

Mungal S.A., Walker, M., Wilgus, R., Kong, D. F., Tcheng, J. E., McCourt, B.

Representing Multiple Representing Multiple Use Cases in a Single Cardiovascular Domain Analysis Model: Reuse of Metadata via Atomic Classes.

(Manuscript in preparation)

 

Peer Reviewed Publications:

 

Farin CE, Farin PW, Mungal SA. 1997. Maternal insulin-like growth factor-I (IGF-I) and development of in vivo- and in vitro-derived bovine fetuses.

Theriogenology 47:318.

 

Farin PW, Farin CE, Mungal SA. 1997. Measurements of bovine fetuses and placentas at 63 days after transfer of embryos produced in vivo or in vitro.

Theriogenology 47: Abstract 319.

 

Mungal SA, Farin CE, Farin PW. 1997. Competitive RT-PCR for quantitation of bovine IGF-I mRNA in cumulus oocyte complexes and fetal liver.

Theriogenology 47:217.

 

Siadat-Pajouh, M., Ayscue, A., Mungal, S., Walton, L., and Herman, B. (1995). 

Detection of Human Papillomavirus Type 16 Genome in Cervical Smears by Fluorescent In Situ Hybridization and PCR

Cell Vision 203(2)3

 

Liang, X.H., Mungal, S.A., Ayscue, A.H., Meissner, J.D., Wodnicki, P., Hockenbery, D., Lockett, S.J., and

Herman, B. (1995).

Bcl-2 Proto-oncogene Expression in Cervical Carcinoma Cell Lines Containing Inactive p53

J Cell Biochem  Mar;57(3):509-21

 

Via DF, DiMaio JM, Mungal S, Berend KR, Pappas TN, Lyerly HK: Gene Therapy for Pancreatic Carcinoma. Surgical Forum 49, 480-481, 1993.

 

Berend, K.R., Jung, J.U., Boyle,T.J., DiMaio, J.M., Mungal, S.A., Desrosiers, R.C., and Lyerly ,H.K.  (1993).

Phenotypic and Functional Consequences of Herpesvirus Saimiri Infection of Human CD8+

Cytotoxic T Lymphocytes

J.Virol.  67:6317-6321.

 

Boyle, T.J., Coles, R.E., Mungal, S.A., Kizilbash, A.M. and Lyerly, H.K. (1992).

The SCID Mouse: A Model of Post-Transplantation Lymphoma

Irish J. Med. Sci. Vol. 52 (1):37

 

Mungal, S.A., Steinberg, B. and Taichman, L. (1992).

Replication of Plasmid-Derived Human Papillomavirus Type 11 DNA in Cultured Human                                           Keratinocytes

J. Virol. 66:3220-3224

 

 

PROFESSIONAL EXPERIENCE

 

Position: ConsultantJanuary 2015 to Present

 

 

Duke Cancer InstituteOctober 2004 to December 2014

Position: Project Manager/Analyst/Programmer/Data and Semantic Manager

 

Project:Next Generation Sequencing data analysis

Role: Analyst / Programmer / Project Manager

·               Used NGS data analysis with RNA-Seq, ChIP-Seq and RRBS-Seq) and Bioconductor/Hadoop with QA.

 

 

Project:Used C code to complete various matrix calculations on the GPU using CUDA for microarray studies (HPC).

Role: Analyst / Programmer / Project Manager

·               Used CUDA 5.0 for parallel computation with C on the Blue Devil Grid (Linux) with QA (HPC).

 

Project:mRNA Microarray data validation and submission to GEO

Role: Data Analyst / Data Manager / Programmer / Project Manager

·               Verified data integrity and used R and knitr to validate R code for computational analysis of Affymetrix mRNA microarray data (HPC).

·               Managed data and annotated metadata of multiple studies for submission to GEO.

 

Project:Wrote methods paper on representation of metadata standard (work in progress)

Role: Lead author/ Project Manager

·               Used UML via Enterprise Architect, Word and LaTeX for editing (QA) and publishing.

 

Project:Setup virtual servers on my local machine and on the Duke’s network (by our LAN Admin) using Debian OS with R and other software tools to create a compatible work environment for programming and validation (QA)

Role: Analyst / Programmer / Project Manager

·               Used R, knitr, LaTeX and other software tools for validation (QA).

 

Project:Upgrade and expand RProteomics with WSO2 ESB development including a secure Portal with provenance (funded grant cited above)

Role: Interoperability Software / Semantic Developer / Architect / Project Manager

·               Upgraded Java code from 1.2 to 1.6

·               Rewrote the caGrid interface and hookup to upgrade from caGrid 0.5 to 4.0 (HPC).

·               Switched from caGrid (support was discontinued) to web services (used Vaadin then Jersey and finally the Zend framework to create web services and the GUI) with quality assurance (QA).

 

Project:Collaboration to create the Cardiovascular data standard with DCRI and ACC.

Role: Data Standard and Semantic Interoperability Developer, Architect and Mentor

·               Worked on harmonization of definitions.

·               Built the UML Cardiovascular data standard model with team – became an accepted HL7 metadata standard.

·               Worked on a reporting application from a UML source diagram.

·               Mentored the NCI’s Common Data Element curation process.

 

Project:Vocabulary & Common Data Element (VCDE) Workspace funded participant

Role: VCDE Mentor / Reviewer / CDE Curator / Project Manager

·               Mentored 20+ models from their projects within the caBIG initiative.

·               Reviewed (QA) 30+ models from their projects for caBIGTM Silver Level Compatibility (lead reviewer (QA) on 20+ models).

·               Authored white paper and co-authored SOPs , white papers and training slides as needed.

·               Developed VCDE Semantic Criteria and Grading training materials.

 

Project:caBIG Architecture Workspace participant

Role: Participant / Reviewer (QA)/ Project Manager

·               Initiated and co-authored the Standard Operation Procedure (SOP) for the creation and curation of CDEs for the Best Practices SIG.

·               Reviewed (QA) workflow engines for the Workflow SIG.

 

Project:Created a Clinical Trial application (Electronic Data Capture).

Role: Clinical Trial Software / Database Architect / Developer / Project Manager

·               Developed a 1000+ data point clinical trial application using Oracle 11 database for data mining and security.

·               Architected the Oracle database for clinical drug study data to be HIPAA compliant.

 

Project:caBIG Documentation and Training Workspace participant

Role: Participant / Reviewer / Author/ Project Manager

·               Initiated, authored and co-authored training materials for various areas of the caBIG domain.

·               Authored and co-authored SOPs, white papers and training slides as needed.

 

Project:To translate between various data standards for the caBIG RProteomics project.

Role: Bioinformatics Developer /Architect

·               Developed server side Java code to translate between various data standards including mzXML.

·               Used code generation to cross-translate between R help files and XML schema followed by QA

 

Project:RProteomics

Role: Interoperability Software and Semantic Developer / Architect

·               Developed the server-side and translation code and initiated the caGrid interface (HPC).

·               Created CDEs for RProteomics 6 data models, QA and curated them in NCI’s caDSR.

·               Initiated and co-authored user manual for RProteomics.

·               Authored and co-authored a number of abstracts on RProteomics.

 

TechEngage, Org.June 2003 to 2004

Position: Bioinformatics Instructor/Chairman of the Surveys and Reports Committee

 

Project:To design, develop and teach a 6 hour Bioinformatics course

Role: Courseware Developer / Instructor/ Project Manager

·               Designed and developed course materials (Photoshop) for an introductory Bioinformatics course.

·               Taught the introductory Bioinformatics course for TechEngage second conference.

 

Project:To redesign and improve the current survey and reporting system

Role: Manager

·               Supervised generating the survey reports from MS Access to report to the Executive Team.

·               Supervised & QA programming the front (ASP), and the back end (MS Access) of the web app. to collect survey data.

 

CTU NCSUAugust 2003 to 2004

Position: Bioinformatics Instructor

 

Project:To design, develop materials to teach a 6 month Bioinformatics course

Role: Courseware developer / Instructor

·               Designed and developed course materials (Photoshop) for a Bioinformatics Certification course.

 

April 1998 to June 2004

Position: IT Consultant at various Companies in North Carolina

 

Project:To analyze, migrate data, program and create reports for executive team

Role: DBA/Data Analysis

·               Worked with data analysis team and managers to migrate Healthcare data, write and test (QA) programs and create reports. Used SAS, MS SQLServer 2000 & MS Access.

 

Project:To analyze, report, debug and refactor code for a deployed Enterprise application

Role: Senior Programmer

·               Worked with programming team and managers to complete task. Used Visual C++, XML, MS SQLServer 2000 & Stringray’s tools.

 

Project:Front and back end programming of a HIPAA compliant Web application

Role: Consultant / Java Programmer / Software Architect

·               Documented and mapped out the architecture of the front-end (HTML/JSP) and server-side Java code (J2EE) using IBM Visual Age IDE/Eclipse and reported to the client. The architecture of the system consisted of Apache Web Server, IBM's WebSphere  (application server), Crystal Reports and IBM DB2 on three RISC 6000 servers.

·               Programmed the front (Photoshop/HTML/JSP/CSS), and the back end (servlets/Java Beans) on the web app.

·               Built tables, added constraints, exported and imported Healthcare data for the billing module of the web app using IBM DB2.

 

Project:Validation of Computer Systems for Drug Discovery

Role: Team Leader

·               Responsible for validating 14 computer systems for the Research and Bioanalytical Division, Drug Discovery Department to comply with internal SOPs and the FDA's cGLP/cGMP regulations.

·               Coordinated validations between the Validation and Services Dept., MIS, QA and the scientists.

 

Project:Data import, formatting and reporting for Drug Discovery

Role: Senior Bioinformatics Programmer

·               Responsible for importing and parsing raw data into excel files for consolidation and reporting.

 

Project:Front and back end programming of a Web server application

Role: Consultant / Java Programmer / Software Architect

·               Responsible for documenting and mapping out the architecture of the front-end and server-side java code and reporting to the client. The architecture of the system consisted of MS IIS 5.0, IBM's WebSphere (application server), Crystal Reports and IBM DB2 on three RISC 6000 servers.

·               Programmed the front (Photoshop/HTML/JSP/CSS), and the back end (servlets/Java Beans) on the web app.

·               Responsible for mapping and importing Healthcare data fields after fax import into the database via Teleforms.

 

Project:Conversion of the HPS legacy system to an n-tiered client/server application

Role: Consultant / Java Programmer / Software Architect

·               Responsible for documenting and mapping out the architecture of the front-end and server-side java code and reporting to the client. The architecture of the new system consisted of CICS (Consumer Information Control Server), IBM's WebSphere (transaction server) and DB2 on an IBM 360 mainframe.

·               Responsible for testing the converted n-tiered distributed framework java application. The new system had to precisely mirror the old legacy system (HPS) in look and feel as well as function.

·               Responsible for debugging the converted n-tiered distributed framework java application using IBM's VisualAge IDE and JTest on an NT platform.

·               Assisted in debugging the HPS (COBOL) programs (rules) at the back-end to improve the conditional logic in the business rules.

·               Resource consultant for Web Services using JDK 1.2.2, WebSphere 4.0 and WSTK 3.2 using UDDI, WSDL, SOAP and XML, DB2, Apache Server/Tomcat, WebSphere Studio and HomePage Builder.

·               Designed, implemented and administered LAN in a small office environment using Microsoft Networking via TCP/IP and DSL.

·               Designed, implemented and administered WAN between offices in Virginia and North Carolina using Microsoft Networking (VPN).

 

Project:COM/Java Bridging development and support

Role: Lead Developer / System Architect

·               Responsible for software architecture, development, and performance testing using SQL Stored Procedures with Oracle on AIX using Visual C++, Borland’s JBuilder, Together/J's IDE, and JTest.

·               Provided n-tiered distributed framework & COM/Java bridging support for VB/Delphi developers using Java/EJBs.

·               Supported developers across the USA with the COM/Java bridge to link client applications to server-side Java/EJB code on their workstations via testing, video-conferencing, telephone, documentation, scripts & software.

·               Wrote and tested DLLs in C/C++ to access the MAC address of Ethernet cards on WTS servers & to access Win 32 API system resources for the +Medic Tiger application.

·               Involved with the creation of a test application/simulation for cellular phones using the new WAP technology.

 

Project:Performance Testing

Role: Lead Developer / System Architect

·               Wrote performance test applications in Delphi to benchmark SQL Stored Procedures versus Stored Procedures Alternative server-side java code on the Informix database.

·               Some of the server-side Java code was used by Internet applications such as Web-MD. Debugged and tested this code to allow for multi-threaded/multi-user environment.

·               Wrote performance test applications in VB & Delphi to benchmark the COM/Java bridge & other server-side Java/EJB code.

 

Project:EJB / WebLogic conversion

Role: Lead Developer / System Architect

·               Supported developers to migrate WebLogic 4.5 to 5.1 (to Enterprise Java Beans [XML]) and also supported server-side Java code by refactoring, (using Together/J’s OO tools), implementing, debugging and testing.

·               Involved with the comparison between Bea's WebLogic and IBM's WebSphere EJB transaction servers.

 

Project:Long-term Data Acquisition System (LDAS) application development

Role: Sub-System Lead Developer

·               Participated in the database architecture, development, and database creation using Oracle Forms, PL/SQL Stored Procedures and Erwin.

·               Developed and tested two tiered software app. for TDMS, NIEHS using MS Visual C++/Access, Rational Rose, COM/ActiveX, C & Oracle 8 on NT client-server environment. Wrote 15 modules totaling over 10,000 lines of code for this project.

·               Lead programmer on development team for four subsystems: database population (DAO/ODBC), communications (ftp/web browser), event handling & system utilities (Win 32 API).  Monitored the activities of 5 programmers.

·               Development was done using Oracle 8.0, Crystal Reports, Forms 5.0, Reports 3.0, Designer 2000, PL/SQL 3.0.

 

Project:NIEHS's Budget System

Role: Programmer / Analyst

·               Debugged, tested and maintained programs for an Internet application, the On-line Budget System using MS Internet Server, Photoshop, Power Builder 5, HTML, Java Scripting and Oracle 7 relational database. Application consisted of 6 modules and over 9000 lines of code.

·               Wrote user manual and Web help application module for the On-line Budget System.

·               Conducted On-line Budget System application presentation to management and client staff.

 

Non-peer reviewed articles:

 

Freimuth R, Agarwal P, Frey L, Kiefer R, Mungal S, Sefcovic N, Shaik J, Sharma M, Tchuvatkina O.  Services Aware Interoperability Framework (SAIF) Effects on Mentoring in caBIG.

National Cancer Institute Cancer Biomedical Informatics Grid (caBIG) Vocabularies and Common Data Elements Workspace. 2010 Jun 16. [Epub ahead of print]

 

Freimuth RR, Mungal S, Oster S, Wilkens L. 

caBIG Gold Level Compatibility Criteria and Review Process. 

NCI Cancer Biomedical Informatics Grid (caBIG) Guides to Mentors (Published online). 2009 Feb 3.

 

Mungal S, Freimuth R, Frey L, Keller M, Davis B. 

Silver-level Compatibility Guidelines for Reviewing Information Models, Common Data Elements, and Vocabularies. 

National Cancer Institute Cancer Biomedical Informatics Grid (caBIG) Guides to Mentors (Published online) 2007 Nov 21.

 

Davis B, Freimuth R, Frey L, Keller M, Kurc T, McConnell P, Mungal S.

caBIG SOP:  Version Numbering for Guides to Mentors Documentation. 

National Cancer Institute Cancer Biomedical Informatics Grid (caBIG) Guides to Mentors (Published online) 2007 Oct 22.

 

Davis B, Freimuth R, Frey L, Keller M, Kurc T, McConnell P, Mungal S, Osborne J. 

caBIG SOP: How to be a Mentor. 

National Cancer Institute Cancer Biomedical Informatics Grid (caBIG) Guides to Mentors (Published online) 2007 Mar 1.

 

Davis B, Freimuth R, Frey L, Keller M, Kurc T, McConnell P, Mungal S. 

caBIG SOP:  Leading a Silver Level Compatibility Review. 

National Cancer Institute Cancer Biomedical Informatics Grid (caBIG) Guides to Mentors (Published online) 2006 Nov 20.

 

Abstracts:

 

Seminar Presentations:

 

Mungal, S.

NCIP – The National Cancer Informatics Program

Duke/UNC/NCCU Joint Health Informatics Seminar Series, November 2012, Durham, NC

 

Mungal, S., Walker, M., Kong, D. F., Wilgus, R., Pinchotti, D., Tcheng, J. E., Barry W. T., and McCourt, B.

Representing Multiple Standards in a Single DAM: Use of Atomic Classes

AMIA. March 2012. San Francisco, CA.

 

Wilgus, R., Pinchotti, D., Mungal, S., Kong, D. F., Tcheng, J. E., and McCourt, B.

Specification of a Cardiovascular Metadata Model: A Consensus Standard

AMIA. March 2012. San Francisco, CA.

 

Pinchotti, D., Wilgus, R., Mungal, S., Khalid, A., Srinivasan, G., Tolk, C. Barham, B., Cox, T., Kong, D. F., and McCourt, B.

National Cardiovascular Research Infrastructure: Project Status Update, Year 2

NCRI_CDISC Interchange Conference. October 2011. Baltimore, MD.

 

Mungal, S. and Barry W. T.

Creating CDEs and Forms for REDCap

REDCap Meeting. August 2011. Duke University. Durham, NC.

 

Mungal, S. and Barry W. T.

The Skinny on Data/Meta Standards (ISO 11179)

REDCap Meeting. July 2011. Duke University. Durham, NC.

 

Mungal, S. and Barry W. T.

Duke Cancer Institute Involvement with Data Standards and Semantics

caBIG Architecture Workspace Webinar. May 2011. Rockville, MD.

 

Mungal, S. and Barry W. T.

caBIG® Standards-based Interoperability via the BRIDG Model

Duke Translation Medicine Institute Bioinformatics Core Seminar. April 2010. Durham, NC.

 

Mungal, S., Cooper, M., Ohira, R., Reeves, D., Sharma, M., Wilkins, L., Davis, B. and Barry W. T.

Interoperation with the Address standards using SAIF

caBIG Vocabularies Common Data Elements/Architecture F2F Meeting, Atlanta, GA. October 2009.

 

Mungal, S. A., and Cuticchia, A. J.

Terminology Metadata: Extension of the Service Meta Model

Metadata Study Period. November 2008. Vilamoura, Algarve, Portugal.

 

Mungal, S. A., and Cuticchia, A. J.

Terminology Metadata: Extension of the Service Meta Model

11th Open Forum on Metadata Registries. May 2008. Sydney, NSW Australia.

 

Mungal, S., Freimuth RR. Wilkins, L., Oster, S., and Cuticchia, A. J.

Gold caBIG Compatibility: Criteria Update and GridPIR Pilot Review.

National Cancer Institute Cancer Biomedical Informatics Grid Annual Meeting, Washington, DC. June 2008.

 

Mungal, S., Freimuth RR. and Cuticchia, A. J.

Essentials of caBIG Compatibility: An Overview of the Silver Level Review Process and Criteria.

National Cancer Institute Cancer Biomedical Informatics Grid Annual Meeting, Washington, DC. June 2008.

 

Mungal, S. A., Freimuth, R., Kurc, T., and Frey, L.

What Does caBIG Compatibility Mean?

caBIG Annual Conference. Crystal City, VA. February 5-7, 2007.

 

Freimuth, R., Mungal, S. A., McConnell, P., Kurc, T., Suzek, B., and Frey, L.

Past, Present and Future

caBIG Annual Conference. Crystal City, VA. February 5-7, 2007.

 

Suzek, B., Freimuth, R., Mungal, S. A., McConnell, P., Kurc, T., and Frey, L.

grid-PIR

caBIG Annual Conference. Crystal City, VA. February 5-7, 2007.

 

Kurc, T., Freimuth, R., Mungal, S. A., McConnell, P., Suzek, B., and Frey, L.

Making Data Avail Thru Interfaces

caBIG Annual Conference. Crystal City, VA. February 5-7, 2007.

 

Bondy, J., Courtney, P., Derr L., Mungal, S. A., and Reeves, D.

caBIGTM Mentoring

2007 caBIG Annual Conference. Crystal City, VA. February 5-7, 2007.

 

Reeves, D., Chilli, J., Curtis, T., Freimuth, R., Frey, L., Liefeld, T., Mungal, S. A., Schmandt, l., Suzek, B., Wolfe, C., and Komatsoulis, G.

Metadata Reuse

caBIG Annual Conference. Crystal City, VA. February 5-7, 2007.

 

Mungal, S. A., McConnell, P., Kurc, T., Osborne, J., Freimuth, R., Frey, L., Davis, B., and Cuticchia, A.J.

The caBIG VCDE and Architecture Silver Level Criteria

caBIG Annual Conference. Crystal City, VA. February 5-7, 2007.

 

Mungal, S., Peedin, M., Haney, R. P., and McConnell, P.

Ontology in use on the Cancer Biomedical Informatics Grid (caBIG)

Bridging Knowledge Gaps in Computational Biology. Cary, NC. September 2005.

 

Blondin, P., P. W. Farin, S. A. Mungal, A. E. Crosier, J. E. Alexander, and C. E. Farin. (1999).

Does in vitro culture affect the expression of insulin-like growth factor-II (IGF-II) messenger RNA in fetal bovine liver?

Biol. Reprod. 60 (Suppl. 1):248 (Abstr.).

 

Mungal, S. A., Farin, C. E., and Farin, P. W. (1997).

Competitive RT-PCR for Quantitation of Bovine IGF-I mRNA in Cumulus Oocyte

Complexes and Fetal Liver

Theriogenology 47:217.

Farin, C. E., Farin, P. W., Mungal, S. A.  (1997).

Maternal Insulin-like Growth Factor-I (IGF-I) and Development of In Vivo- and

In Vitro-Derived Bovine Fetuses 

Theriogenology 47:318.

 

Farin, P. W., Farin, C. E., Mungal, S. A.  (1997). 

Measurements of Bovine Fetuses and Placentas at 63 Days after Transfer of Embryos

Produced In Vivo or In Vitro 

Theriogenology 47:319.

 

Mungal, S. A., Farin, C. E., and Farin, P. W.

Competitive RT-PCR for Quantitation of Bovine IGF-I mRNA in Cumulus Oocyte Complexes

and Fetal Liver

Seminar presentation at NCSU. Raleigh, NC. September 1996

 

Siadat-Pajouh, M., Ayscue, A.H., Mungal, S.A., Walton, L., Van Lee, L., and Herman, B.

Quantitative Detection of High Risk (HPV) Sequences in Cervical Smears at the Cellular Level

85th Annual meeting of the American Association for Cancer Research (AACR). April 10 - 13, 1994.

San Francisco, California.

 

Siadat-Pajouh, M., Ayscue, A.H., Mungal, S.A., Periasamy, A., Walton, L., Van Lee, L., Lockett, S.J., and Herman, B.

Introduction of a Sensitive and Quantitative Fluorescent Based In Situ Hybridization Technique to Detect High Risk HPV Sequences in Cervical Smears and Cell Lines

12th Annual Papillomavirus Conference. Sept. 26 - Oct. 1. 1993. Baltimore, Maryland.

 

Mungal, S.A., Steinberg, B. and Taichman, L.

Replication of Plasmid-Derived Human Papillomavirus Type 11 DNA in Cultured Human                                                         Keratinocytes

Seminar presentation at UNC @ Chapel Hill. NC. June 1993.

 

Berend, KR., Boyle, TJ., DiMaio, JM., Mungal, SA., Jung, J. Desrosiers, RC. and Lyerly, HK.

Herpes Saimiri Transformation of Human Cytotoxic T Lymphocytes

1993 Annual Meeting, The Society of Surgical Oncology. March 17-21, 1993

 

Mungal, S.A., Steinberg, B. and Taichman, L.

Replication of Plasmid-Derived Human Papillomavirus Type 11 DNA in Cultured Human                                                         Keratinocytes

June 1992 Seminar presentation at Burroughs Wellcome. RTP, NC.

 

Mungal, S.A., Steinberg, B. and Taichman, L.

Replication of Plasmid-Derived Human Papillomavirus Type 11 DNA in Cultured Human                                                         Keratinocytes

May 1992 Seminar presentation at SUNY @ Stony Brook. NY.

 

Mungal, S.A., Shelness, G.S., Newman, T.C., Sorci-Thomas, M., Rudell, L.L., and Williams, D.L.

Transcription of the Monkey Apo E Gene

1985 Annual Meeting, The American Heart Association 58th Scientific Sessions. Washington, D.C.

Poster Presentations:

Barry W. T., McConnell, P., Chen, W., Annechiarico, R., and Mungal, S.

Upgrading RProteomics on the Cancer Bioinformatics Grid (caBIG®)

AMIA. March 2012. San Francisco, CA.

 

Mungal, S., Walker, M., Kong, D. F., Wilgus, R., Pinchotti, D., Tcheng, J. E., Barry W. T., and McCourt, B.

Representing Multiple Standards in a Single DAM: Use of Atomic Classes

AMIA. March 2012. San Francisco, CA.

 

Mungal, S., Cooper, M., Ohira, R., Reeves, D., Sharma, M., Wilkins, L., Davis, B. and Barry W. T.

How to interoperate with the Address standards using SAIF

National Cancer Institute Cancer Biomedical Informatics Grid Annual Meeting, Washington, DC. Sept. 2010.

 

Nagarajan, R., Freimuth R., Mungal S., Wilkens, L., Oster S., Wilkens L., Suzek, B., Frey, L., Hastings, S., Buntrock, J., Stancl, C., Tuner, S., Davis, B., Wright, L., and Hartel, F.

caBIG Gold Level Compatibility Guidelines

National Cancer Institute Cancer Biomedical Informatics Grid Annual Meeting, Washington, DC. July 2009.

 

Mungal, S., McConnell, P., Chen, W., Annechiarico, R. and Barry W. T.

RProteomics on the Cancer Bioinformatics Grid (caBIG®)

caBIG-NCRI Joint Conference. September 2009. London, UK.

 

Mungal, S., Cooper, M., Dobratz, K., Smith, D., Stafford, G., Wilkens, L., and Cuticchia, A. J.

CDE Standard Submission Requirements: Criteria and Process

National Cancer Institute Cancer Biomedical Informatics Grid Annual Meeting, Washington, DC. June 2008.

 

Mungal, S. A.,  McConnell, P., Agarwal, P., and Cuticchia, A. J.

Vocabularies/Terminologies and Ontologies in caBIGTM: New Cancer Research Tools

Duke Comprehensive Cancer Center Annual Conference. March 2007. Durham, NC.

 

Mungal, S. A.,  McConnell, P., Haney, R. P., Peedin, M., Agarwal, P., and Cuticchia, A. J.

RProteomics and caBIGTM: New Cancer Research Tools

Duke Comprehensive Cancer Center Annual Conference. March 2007. Durham, NC.

 

Mungal, S. A., Freimuth, R., Frey, L., and Davis, B.

The caBIG™ VCDE Silver Level Criteria

caBIG Annual Conference. April 2007. Crystal City, VA

 

McConnell, P., Haney, R.P., Mungal, S. A., Peedin, M., Agarwal, P., Cuticchia, A. J.,

Fenstermacher, D., Sellers, K., Street, C., McWeeney, S., Rajaraman, V., Ladera,. T., Lin, S. M., and Borchers, C.

RProteomics: An Application for Analyzing Mass Spectrometry Proteomics Data

caBIG Annual Conference. April 2006. Washington, DC.

 

Mungal, S., Haney, R. P., Peedin, M., Lin, S. M., and McConnell, P.

RProteomics on the Cancer Bioinformatics Grid (caBIG)

Bridging Knowledge Gaps in Computational Biology. September 2005. Cary, NC.

 

Mungal, S., Haney, R. P., Peedin, M., Lin, S. M., and McConnell, P.

RProteomics on the Cancer Biomedical Informatics Grid (caBIG)

Bridging Knowledge Gaps in Computational Biology. September 2005. Cary, NC.

 

Haney, R. P., Peedin, M., Mungal, S. A., and McConnell, P.

R, SAS, and MATLAB Interoperability: Formal Algebraic Models and Practical Aspects

Bridging Knowledge Gaps in Computational Biology. September 2005. Cary, NC.

 

Haney, RP, Parker, C, Lin, S. M., McConnell, P, Mungal, SA, and Borchers, C.

Statistical Analysis of Quantitation Data

PPNL, Annual Meeting 2005.

 

Mungal, S. A., Haney R. P., Peedin, M., Lin, S. M., and McConnell. P.

caBIG and RProteomics

Duke Frontiers Symposium, June 2005. Durham, NC.

 

Haney, R. P., Parker, C., Lin, S. M., McConnell, P., Mungal, S. A., and Borchers. C.

Protein Quantitation using an Integrated Statistical Analysis Pipeline

53rd Annual ASMS Conference. May 2005. San Antonio, TX.

 

Blondin, P., Farin , C. E., Farin, P. W., Mungal,  S.A.  (1998).

Effect of In Vitro Culture on Insulin-like Growth Factor-II (IGF-II) messenger RNA in

Fetal Bovine Liver

SSR Annual Meeting, 1998.

 

Mungal, S. A., Farin, C. E., and Farin, P. W.

Competitive RT-PCR for Quantitation of Bovine IGF-I mRNA in Cumulus Oocyte

Complexes and Fetal Liver

Annual Triangle Reproductive Physiology Symposia. January, 1997. Seminar presentation at UNC @ Chapel Hill. NC.

 

Siadat-Pajouh, M., Ayscue, A.H., Mungal, S.A., Walton, L., Van Lee, L., and Herman, B.

Quantitative Detection of High Risk Human Papillomavirus (HPV) in Cervical Smears at the                                                          Cellular Level

AACR. April 10-13, 1994. San Francisco, California

 

Siadat-Pajouh, M., Ayscue, A.H., Mungal, S.A., Periasamy, A., Walton, L., Van Lee, L., Lockett, S.J.,                             and Herman, B.

Introduction of a Sensitive and Quantitative Fluorescent Based In Situ Hybridization

Technique to Detect High Risk HPV Sequences in Cervical Smears and Cell Lines

12th Annual Papillomavirus Conference. Sept. 26- Oct. 1. 1993. Baltimore, Maryland.

 

Liang, X.H., Ayscue, A.H., Mungal, S.A., Hockenbery, D., Lockett, S.J., and Herman, B.

Bcl-2 Proto-oncogene Expression in Cervical Carcinoma Cell Lines

12th Annual Papillomavirus Conference. Sept. 26- Oct. 1. 1993. Baltimore, Maryland.

 

Via, DF, DiMaio JM, Mungal SA, Berend KR, Jordan PB, Lyerly HK.

A Truncated Carcinoembryonic Antigen (CEA) Promoter Allows Tissue Specific

Retro-Viral-Mediated Gene Expression in CEA Expressing Tumor Cells

              Annual Meeting of the International College of Surgeons, 1993.

 

Via, D.F., DiMaio, J.M., Mungal, S.A., Berend, K.R., Pappas, T.N., and Lyerly, H.K.

Gene Therapy for Pancreatic Carcinoma.

1993 Annual Meeting, Duke Comprehensive Cancer Center. March 20th, 1993. Durham, NC

 

DiMaio, J.M., Berend, K.R., Boyle, T.J., Via, D.F., Mungal, S.A., Lyerly, H.K.

Growth Transformation of Human Antigen Specific Cytotoxic T Lymphocytes                                                         The American College of Surgeons Annual Scientific Meeting 1993

 

DiMaio, J. M., Mungal, S. A., Berend, K.B., Bradford, W. D., Buckley, R.H., Borowitz, M.J., Lyerly, H.K.

Epstein-Barr Virus Latent Gene Expression in B Cell Tumors in Immunosuppressed Patients

The American Society of Transplant Surgeon's Nineteenth Scientific Meeting. May, 1993.

Taichman, L., Steinberg, B., Auborn, K. and Mungal, S.A.

Episomal Replication of Plasmid-Derived HPV11 DNA in Primary Keratinocytes in Culture.

11th International Papillomavirus Workshop. Sept. 5-11. 1992. Edinburg, Scotland, pg. 333 bk. of abstracts.

 

References:

 

References will be provided upon request.

 

Page 1 of 11



Experience

BACK TO TOP

 

Job Title

Company

Experience

Project Manager/Bioinformatics Programmer

Duke University

- Present

 

Additional Info

BACK TO TOP

 

Current Career Level:

Manager (Manager/Supervisor of Staff)

Date of Availability:

Immediately

Work Status:

US - I am authorized to work in this country for any employer.

Active Security Clearance:

None

US Military Service:

Citizenship:

US citizen

 

 

Target Job:

Target Job Title:

Project Manager/Data Architect/Modeler/Bioinformatics Programmer/Data Analyst

Desired Job Type:

Employee

Desired Status:

Full-Time

 

Target Company:

Company Size:

Industry:

Biotechnology/Pharmaceuticals
Computer/IT Services

Occupation:

Biotech/R&D/Science

·         Biological/Chemical Research

IT/Software Development

·         Database Development/Administration

 

Target Locations:

Selected Locations:

US-NC-Raleigh/Durham-RTP

Relocate:

No

Willingness to travel:

Up to 25% travel

 

Languages:

Languages

Proficiency Level

English

Fluent