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Salvatore Mungal
smungal@gmail.com (919) 434-6585 Salvatore Mungal
8016 Laurel
Mountain Road Raleigh, NC
27613-8818 SUMMARY
Over Fifteen years
of experience
in Academic and Commercial Biomedicine Informatics and QA: - ·
Over three
years experience in C++, Visual C++ (3+ years MFC) and 7+ years in Java. ·
Over five
years experience in building Web applications using JSP, Java,/EJB and
databases. ·
Over 8 years
experience with interoperability, data standards and the semantic domain. ·
Solid Oracle
back-end programming experience in areas such as data reporting, SQL
Development, Oracle performance tuning, and other DBA functions. ·
Software
development in CUDA, VC++, and JAVA with Oracle, IBM DB2 and
MySQL databases. ·
Proficient in
using COM/DCOM technology to develop distributed database system
applications. ·
Knowledgeable
with Bioinformatics, Pharmaceutical, Research, Medical, Biostatistics,
Internet and Financial industries. An excellent leader, project manager, data
modeler/architect, business analyst, quality assurance testing, programmer
and analyst with a strong background in bioinformatics, data standards (HL7)
and the semantic domain who is highly motivated with initiative and good
communication skills. Experience managing patient data under HIPAA
confidentially regulations with Quality Assurance/Validation. Ability to
develop expertise in new areas in extremely short periods. Strong data modeling/mapping,
data analysis, writing and presentation skills. Technical: Database Products: Oracle 7/8/9i/10G
client/server PL/SQL (ODBC), MySQL, MS Access (DAO), Informix, IBM DB2 Database Languages:PL/SQL 8.0/9i,
SQL*Plus 8.0/9i, MySQL Languages/IDEs:C, CUDA, C#,
C++, MS Visual C++(MFC), SAS, R, XML, J2EE Java, JUnit, Perl, Python,
CodeWarrior, Borland’s JBuilder, Eclipse and Delphi, UML, RDF, OWL Web:
MS
Internet Server, Tomcat/Apache Server, VBScript, JavaScript, ASP, JSP, CSS,
PhotoShop, DHTML, XForms, XSLT, Struts, Grid Hardware:Sun,
IBM PCs & Compatibles Operating
Systems/Env:Unix,
Linux, Korn Shell Scripting, Sun Sparc/Solaris, DOS, PVCS, Windows
NT/2000/XP/7, Weblogic, WebSphere, Web Services, .NET, GIT, Next Generation
Sequencing, Bioconductor, Hadoop Standards:ISO/IEC 11179, ISO
21090, HL7, CDISC, BRIDG EDUCATION Certificate in Programming - BS core
courses in Computer Science at NCSU. MS - Oral Biology and Pathology. Stony Brook
University. BS - Biochemistry.
Stony Brook University. CERTIFICATION and TRAINING ST511
and 512. Statistical Programming for the Life Sciences (SAS). NCSU. 1996. Object
Oriented Programming, The Learning Tree, Washington, DC. 2000. Java
Programming, The Learning Tree, Washington, DC. 2000. Object
Oriented Design, Together/J, NC. 2000. Oracle 9i Database
Administrator, Wake Tech, NC. 2000 C#
Object Oriented Programming on .NET, Developer Mentor, NC. 2003 Base
SAS I and II Programming at TechEngage, NC. 2003. ASP
.NET Programming using C# and VB, Developer Mentor, NC. 2004 Honors and Service 1991Patent awarded
- Invention No. R-899, “In Vitro Assay for Human Papilloma DNA
Replication” (2004-2010) Funded
participant for multiple workspaces within NCI’s caBIG initiative 2006Mentoring Award
for NCI’s caBIGTM VCDE
(Vocabulary/Common Data Elements) workspace 2006Excellence
Award for work in the caBIG program 2007Excellence in
Mentoring Award as a guide to mentors for NCI’s caBIGTM VCDE workspace 2007Outstanding
Achievement Award as a caBIGTM team member from the Duke Comprehensive
Cancer Center 2008Excellence in
Mentoring Award as a guide to mentors for NCI’s caBIGTM VCDE workspace 2008Change
Agent Award as a member of the Analytical Services Best Practice Working
Group for NCI’s caBIGTM ICR workspace 2010Duke
Teamwork Awards: Data Management Solutions Team – Clinical Data Collection
Gurus (2010-2011) Funded
by Duke Clinical Research Institute (DCRI) to architect and implement the
Cardiovascular Data Standards 2011Nominated
Member: Food and Drug Administration (FDA) Clinical Trials Repository Expert
Advisory Panel 2011Funded grant:
Co-PI with Dr. William Barry, “Integration of Proteomics and Gene Expression
Profiling: a rigorous and systematic approach to biomarker development in
high-throughput biotechnologies.” 2011 -Chairman of
the Data Standards Committee (REDCap) 2012 - Reviewer for
AMIA Other Interest (2005 – Present)
Assistant Scoutmaster with BSA Troop 350 (2008
– 2009)President of Council for Entrepreneurial Development (CED) Visioneers
Toastmasters Club (2009 – 2010)President
of Centennial Visioneers Toastmasters Club Book Chapters: Lin, S., S. A. Mungal, R. Haney, E.
F. Patz, and P. McConnell (2006), Advanced Data Mining Technologies in
Bioinformatics, In Hsu, H (Ed.), Proteomics with Mass Spectrometry.
Idea Group Inc. pp. 5.85-5.101 Manuscript in Preparation: Mungal S.A., Walker, M., Wilgus,
R., Kong, D. F., Tcheng, J. E., McCourt, B. Representing
Multiple Representing Multiple Use Cases in a Single Cardiovascular Domain
Analysis Model: Reuse of Metadata via Atomic Classes. (Manuscript in preparation) Peer Reviewed Publications: Farin CE, Farin PW, Mungal SA. 1997.
Maternal insulin-like growth factor-I (IGF-I) and development of in vivo-
and in vitro-derived bovine fetuses. Theriogenology
47:318. Farin PW, Farin CE, Mungal SA. 1997.
Measurements of bovine fetuses and placentas at 63 days after transfer of
embryos produced in vivo or in vitro. Theriogenology
47: Abstract 319. Mungal SA, Farin CE, Farin
PW. 1997. Competitive RT-PCR for quantitation of bovine IGF-I mRNA in
cumulus oocyte complexes and fetal liver. Theriogenology
47:217. Siadat-Pajouh, M., Ayscue, A., Mungal,
S., Walton, L., and Herman, B. (1995). Detection
of Human Papillomavirus Type 16 Genome in Cervical Smears by Fluorescent In
Situ Hybridization and PCR Cell
Vision 203(2)3 Liang, X.H., Mungal, S.A., Ayscue,
A.H., Meissner, J.D., Wodnicki, P., Hockenbery, D., Lockett, S.J., and Herman,
B. (1995). Bcl-2
Proto-oncogene Expression in Cervical Carcinoma Cell Lines Containing
Inactive p53 J Cell Biochem
Mar;57(3):509-21 Via DF, DiMaio JM, Mungal S, Berend
KR, Pappas TN, Lyerly HK: Gene Therapy for Pancreatic Carcinoma.
Surgical Forum 49, 480-481, 1993. Berend, K.R., Jung,
J.U., Boyle,T.J., DiMaio, J.M., Mungal, S.A., Desrosiers, R.C., and
Lyerly ,H.K. (1993). Phenotypic and Functional Consequences of
Herpesvirus Saimiri Infection of Human CD8+ Cytotoxic T Lymphocytes J.Virol.
67:6317-6321. Boyle, T.J., Coles, R.E., Mungal, S.A.,
Kizilbash, A.M. and Lyerly, H.K. (1992). The
SCID Mouse: A Model of Post-Transplantation Lymphoma Irish
J. Med. Sci. Vol. 52 (1):37 Mungal, S.A., Steinberg, B. and
Taichman, L. (1992). Replication
of Plasmid-Derived Human Papillomavirus Type 11 DNA in Cultured Human
Keratinocytes J.
Virol. 66:3220-3224 PROFESSIONAL
EXPERIENCE Position:
ConsultantJanuary 2015 to Present Duke
Cancer InstituteOctober 2004 to December 2014 Position:
Project Manager/Analyst/Programmer/Data and Semantic Manager Project:Next Generation
Sequencing data analysis Role: Analyst /
Programmer / Project Manager ·
Used NGS data analysis with RNA-Seq, ChIP-Seq and RRBS-Seq) and Bioconductor/Hadoop with QA. Project:Used C code to
complete various matrix calculations on the GPU using CUDA for microarray
studies (HPC). Role: Analyst /
Programmer / Project Manager ·
Used CUDA 5.0 for parallel
computation with C on the Blue Devil Grid (Linux) with QA (HPC). Project:mRNA Microarray
data validation and submission to GEO Role: Data Analyst /
Data Manager / Programmer / Project Manager ·
Verified data integrity and used R
and knitr to validate R code for computational analysis of Affymetrix mRNA
microarray data (HPC). ·
Managed data and annotated
metadata of multiple studies for submission to GEO. Project:Wrote methods
paper on representation of metadata standard (work in progress) Role: Lead author/
Project Manager ·
Used UML via Enterprise Architect,
Word and LaTeX for editing (QA) and publishing. Project:Setup virtual
servers on my local machine and on the Duke’s network (by our LAN Admin)
using Debian OS with R and other software tools to create a compatible work
environment for programming and validation (QA) Role: Analyst /
Programmer / Project Manager ·
Used R, knitr, LaTeX and other
software tools for validation (QA). Project:Upgrade and expand
RProteomics with WSO2 ESB development including a secure Portal with provenance
(funded grant cited above) Role: Interoperability
Software / Semantic Developer / Architect / Project Manager ·
Upgraded Java code from 1.2 to 1.6 ·
Rewrote the caGrid interface and
hookup to upgrade from caGrid 0.5 to 4.0 (HPC). ·
Switched from caGrid (support was
discontinued) to web services (used Vaadin then Jersey and finally the Zend
framework to create web services and the GUI) with quality assurance (QA). Project:Collaboration to
create the Cardiovascular data standard with DCRI and ACC. Role: Data Standard and
Semantic Interoperability Developer, Architect and Mentor ·
Worked on harmonization of
definitions. ·
Built the UML Cardiovascular data
standard model with team – became an accepted HL7 metadata standard. ·
Worked on a reporting application
from a UML source diagram. ·
Mentored the NCI’s Common Data
Element curation process. Project:Vocabulary &
Common Data Element (VCDE) Workspace funded participant Role: VCDE Mentor /
Reviewer / CDE Curator / Project Manager ·
Mentored 20+ models from their
projects within the caBIG initiative. ·
Reviewed (QA) 30+ models from
their projects for caBIGTM Silver Level Compatibility (lead reviewer (QA) on 20+
models). ·
Authored white paper and
co-authored SOPs , white papers and training slides as needed. ·
Developed VCDE Semantic Criteria
and Grading training materials. Project:caBIG Architecture
Workspace participant Role: Participant /
Reviewer (QA)/ Project Manager ·
Initiated and co-authored the
Standard Operation Procedure (SOP) for the creation and curation of CDEs for
the Best Practices SIG. ·
Reviewed (QA) workflow engines for
the Workflow SIG. Project:Created a Clinical
Trial application (Electronic Data Capture). Role: Clinical Trial
Software / Database Architect / Developer / Project Manager ·
Developed a 1000+ data point
clinical trial application using Oracle 11 database for data mining and
security. ·
Architected the Oracle database
for clinical drug study data to be HIPAA compliant. Project:caBIG
Documentation and Training Workspace participant Role: Participant /
Reviewer / Author/ Project Manager ·
Initiated, authored and
co-authored training materials for various areas of the caBIG domain. ·
Authored and co-authored SOPs,
white papers and training slides as needed. Project:To translate
between various data standards for the caBIG RProteomics project. Role: Bioinformatics
Developer /Architect ·
Developed server side Java code to
translate between various data standards including mzXML. ·
Used code generation to
cross-translate between R help files and XML schema followed by QA Project:RProteomics Role: Interoperability
Software and Semantic Developer / Architect ·
Developed the server-side and
translation code and initiated the caGrid interface (HPC). ·
Created CDEs for RProteomics 6
data models, QA and curated them in NCI’s caDSR. ·
Initiated and co-authored user
manual for RProteomics. ·
Authored and co-authored a number
of abstracts on RProteomics. TechEngage,
Org.June 2003 to 2004 Position:
Bioinformatics Instructor/Chairman of the Surveys and Reports Committee Project:To design, develop and teach a 6
hour Bioinformatics course Role: Courseware
Developer / Instructor/ Project Manager ·
Designed and developed course
materials (Photoshop) for an introductory Bioinformatics course. ·
Taught the introductory
Bioinformatics course for TechEngage second conference. Project:To redesign and improve the current
survey and reporting system Role: Manager ·
Supervised generating the survey
reports from MS Access to report to the Executive Team. ·
Supervised & QA programming
the front (ASP), and the back end (MS Access) of the web app. to collect
survey data. CTU NCSUAugust 2003
to 2004 Position:
Bioinformatics Instructor Project:To design, develop materials to
teach a 6 month Bioinformatics course Role: Courseware
developer / Instructor ·
Designed and developed course
materials (Photoshop) for a Bioinformatics Certification course. April 1998 to June 2004 Position: IT Consultant at various
Companies in North Carolina Project:To analyze, migrate data, program
and create reports for executive team Role: DBA/Data Analysis ·
Worked with data analysis team and
managers to migrate Healthcare data, write and test (QA) programs and create
reports. Used SAS, MS SQLServer 2000 & MS Access. Project:To analyze, report, debug and
refactor code for a deployed Enterprise application Role: Senior Programmer ·
Worked with programming team and
managers to complete task. Used Visual C++, XML, MS SQLServer 2000 &
Stringray’s tools. Project:Front and back end programming of a
HIPAA compliant Web application Role: Consultant / Java
Programmer / Software Architect ·
Documented and mapped out the
architecture of the front-end (HTML/JSP) and server-side Java code (J2EE)
using IBM Visual Age IDE/Eclipse and reported to the client. The architecture
of the system consisted of Apache Web Server, IBM's WebSphere
(application server), Crystal Reports and IBM DB2 on three RISC 6000 servers. ·
Programmed the front
(Photoshop/HTML/JSP/CSS), and the back end (servlets/Java Beans) on the web
app. ·
Built tables, added constraints,
exported and imported Healthcare data for the billing module of the web app
using IBM DB2. Project:Validation of Computer Systems for
Drug Discovery Role: Team Leader ·
Responsible for validating 14
computer systems for the Research and Bioanalytical Division, Drug Discovery
Department to comply with internal SOPs and the FDA's cGLP/cGMP regulations. ·
Coordinated validations between
the Validation and Services Dept., MIS, QA and the scientists. Project:Data import, formatting and
reporting for Drug Discovery Role: Senior
Bioinformatics Programmer ·
Responsible for importing and
parsing raw data into excel files for consolidation and reporting. Project:Front and back end programming of a
Web server application Role: Consultant / Java
Programmer / Software Architect ·
Responsible for documenting and
mapping out the architecture of the front-end and server-side java code and
reporting to the client. The architecture of the system consisted of MS IIS
5.0, IBM's WebSphere (application server), Crystal Reports and IBM DB2 on
three RISC 6000 servers. ·
Programmed the front
(Photoshop/HTML/JSP/CSS), and the back end (servlets/Java Beans) on the web
app. Project:Conversion of the HPS legacy system
to an n-tiered client/server application Role: Consultant / Java
Programmer / Software Architect ·
Responsible for documenting and
mapping out the architecture of the front-end and server-side java code and
reporting to the client. The architecture of the new system consisted of CICS
(Consumer Information Control Server), IBM's WebSphere (transaction server)
and DB2 on an IBM 360 mainframe. ·
Responsible for testing the
converted n-tiered distributed framework java application. The new system had
to precisely mirror the old legacy system (HPS) in look and feel as well as
function. ·
Responsible for debugging the
converted n-tiered distributed framework java application using IBM's
VisualAge IDE and JTest on an NT platform. ·
Assisted in debugging the HPS
(COBOL) programs (rules) at the back-end to improve the conditional logic in
the business rules. ·
Resource consultant for Web
Services using JDK 1.2.2, WebSphere 4.0 and WSTK 3.2 using UDDI, WSDL, SOAP
and XML, DB2, Apache Server/Tomcat, WebSphere Studio and HomePage Builder. ·
Designed, implemented and
administered LAN in a small office environment using Microsoft Networking via
TCP/IP and DSL. ·
Designed, implemented and
administered WAN between offices in Virginia and North Carolina using
Microsoft Networking (VPN). Project:COM/Java Bridging
development and support Role: Lead Developer /
System Architect ·
Responsible for software
architecture, development, and performance testing using SQL Stored
Procedures with Oracle on AIX using Visual C++, Borland’s JBuilder,
Together/J's IDE, and JTest. ·
Provided n-tiered distributed
framework & COM/Java bridging support for VB/Delphi developers using
Java/EJBs. ·
Supported developers across the
USA with the COM/Java bridge to link client applications to server-side
Java/EJB code on their workstations via testing, video-conferencing,
telephone, documentation, scripts & software. ·
Wrote and tested DLLs in C/C++ to
access the MAC address of Ethernet cards on WTS servers & to access Win
32 API system resources for the +Medic Tiger application. ·
Involved with the creation of a
test application/simulation for cellular phones using the new WAP technology. Project:Performance
Testing Role: Lead Developer /
System Architect ·
Wrote performance test
applications in Delphi to benchmark SQL Stored Procedures versus Stored
Procedures Alternative server-side java code on the Informix database. ·
Some of the server-side Java code
was used by Internet applications such as Web-MD. Debugged and tested this
code to allow for multi-threaded/multi-user environment. ·
Wrote performance test
applications in VB & Delphi to benchmark the COM/Java bridge & other
server-side Java/EJB code. Project:EJB / WebLogic
conversion Role: Lead Developer /
System Architect ·
Supported developers to migrate
WebLogic 4.5 to 5.1 (to Enterprise Java Beans [XML]) and also supported
server-side Java code by refactoring, (using Together/J’s OO tools),
implementing, debugging and testing. ·
Involved with the comparison
between Bea's WebLogic and IBM's WebSphere EJB transaction servers. Project:Long-term Data
Acquisition System (LDAS) application development Role: Sub-System Lead
Developer ·
Participated in the database
architecture, development, and database creation using Oracle Forms, PL/SQL
Stored Procedures and Erwin. ·
Developed and tested two tiered
software app. for TDMS, NIEHS using MS Visual C++/Access, Rational Rose,
COM/ActiveX, C & Oracle 8 on NT client-server environment. Wrote 15
modules totaling over 10,000 lines of code for this project. ·
Lead programmer on development
team for four subsystems: database population (DAO/ODBC), communications
(ftp/web browser), event handling & system utilities (Win 32 API).
Monitored the activities of 5 programmers. ·
Development was done using Oracle
8.0, Crystal Reports, Forms 5.0, Reports 3.0, Designer 2000, PL/SQL 3.0. Project:NIEHS's Budget
System Role: Programmer /
Analyst ·
Debugged, tested and maintained
programs for an Internet application, the On-line Budget System using MS
Internet Server, Photoshop, Power Builder 5, HTML, Java Scripting and Oracle
7 relational database. Application consisted of 6 modules and over 9000 lines
of code. ·
Wrote user manual and Web help
application module for the On-line Budget System. ·
Conducted On-line Budget System
application presentation to management and client staff. Non-peer reviewed articles: Freimuth R, Agarwal P, Frey L, Kiefer R, Mungal
S, Sefcovic N, Shaik J, Sharma M, Tchuvatkina O. Services Aware
Interoperability Framework (SAIF) Effects on Mentoring in caBIG. National
Cancer Institute Cancer Biomedical Informatics Grid (caBIG) Vocabularies and
Common Data Elements Workspace. 2010 Jun 16. [Epub ahead of print] Freimuth RR, Mungal S, Oster S,
Wilkens L. caBIG
Gold Level Compatibility Criteria and Review Process. NCI
Cancer Biomedical Informatics Grid (caBIG) Guides to Mentors (Published
online). 2009 Feb 3. Mungal
S,
Freimuth R, Frey L, Keller M, Davis B. Silver-level
Compatibility Guidelines for Reviewing Information Models, Common Data
Elements, and Vocabularies. National
Cancer Institute Cancer Biomedical Informatics Grid (caBIG) Guides to Mentors
(Published online) 2007 Nov 21. Davis
B, Freimuth R, Frey L, Keller M, Kurc T, McConnell P, Mungal S. caBIG SOP: Version Numbering for
Guides to Mentors Documentation. National
Cancer Institute Cancer Biomedical Informatics Grid (caBIG) Guides to Mentors
(Published online) 2007 Oct 22. Davis
B, Freimuth R, Frey L, Keller M, Kurc T, McConnell P, Mungal S,
Osborne J. caBIG SOP: How to be a Mentor. National
Cancer Institute Cancer Biomedical Informatics Grid (caBIG) Guides to Mentors
(Published online) 2007 Mar 1. Davis
B, Freimuth R, Frey L, Keller M, Kurc T, McConnell P, Mungal S. caBIG SOP: Leading a Silver Level
Compatibility Review. National
Cancer Institute Cancer Biomedical Informatics Grid (caBIG) Guides to Mentors
(Published online) 2006 Nov 20. Abstracts: Seminar Presentations: Mungal, S. NCIP – The National
Cancer Informatics Program Duke/UNC/NCCU Joint
Health Informatics Seminar Series, November 2012, Durham, NC Mungal,
S., Walker,
M., Kong, D. F., Wilgus, R., Pinchotti, D., Tcheng, J. E., Barry W.
T., and McCourt, B. Representing Multiple Standards in a Single
DAM: Use of Atomic Classes AMIA. March 2012. San Francisco, CA. Wilgus,
R., Pinchotti, D., Mungal, S., Kong, D. F., Tcheng, J. E., and
McCourt, B. Specification of a Cardiovascular Metadata
Model: A Consensus Standard AMIA. March 2012. San Francisco, CA. Pinchotti,
D., Wilgus, R., Mungal, S., Khalid, A., Srinivasan, G., Tolk, C.
Barham, B., Cox, T., Kong, D. F., and McCourt, B. National Cardiovascular Research
Infrastructure: Project Status Update, Year 2 NCRI_CDISC Interchange Conference. October
2011. Baltimore, MD. Mungal,
S. and
Barry W. T. Creating CDEs and Forms for REDCap REDCap Meeting. August 2011. Duke
University. Durham, NC. Mungal,
S. and
Barry W. T. The Skinny on Data/Meta Standards (ISO
11179) REDCap Meeting. July 2011. Duke University.
Durham, NC. Mungal,
S. and
Barry W. T. Duke Cancer Institute Involvement with Data
Standards and Semantics caBIG Architecture Workspace Webinar. May
2011. Rockville, MD. Mungal,
S. and
Barry W. T. caBIG® Standards-based
Interoperability via the BRIDG Model Duke Translation Medicine Institute
Bioinformatics Core Seminar. April 2010. Durham, NC. Mungal,
S., Cooper,
M., Ohira, R., Reeves, D., Sharma, M., Wilkins, L., Davis, B. and Barry
W. T. Interoperation with the Address standards
using SAIF caBIG Vocabularies Common Data
Elements/Architecture F2F Meeting, Atlanta, GA. October 2009. Mungal,
S. A.,
and Cuticchia, A. J. Terminology Metadata: Extension of the
Service Meta Model Metadata Study Period. November 2008.
Vilamoura, Algarve, Portugal. Mungal,
S. A.,
and Cuticchia, A. J. Terminology Metadata: Extension of the
Service Meta Model 11th Open Forum on Metadata Registries. May
2008. Sydney, NSW Australia. Mungal,
S.,
Freimuth RR. Wilkins, L., Oster, S., and Cuticchia, A. J. Gold caBIG Compatibility: Criteria Update
and GridPIR Pilot Review. National Cancer Institute Cancer Biomedical
Informatics Grid Annual Meeting, Washington, DC. June 2008. Mungal,
S.,
Freimuth RR. and Cuticchia, A. J. Essentials of caBIG Compatibility: An
Overview of the Silver Level Review Process and Criteria. National
Cancer Institute Cancer Biomedical Informatics Grid Annual Meeting,
Washington, DC. June 2008. Mungal,
S. A., Freimuth,
R., Kurc, T., and Frey, L. What Does caBIG Compatibility Mean? caBIG Annual Conference. Crystal City, VA.
February 5-7, 2007. Freimuth,
R., Mungal, S. A., McConnell, P., Kurc, T., Suzek, B., and Frey, L. Past, Present and Future caBIG Annual Conference. Crystal City, VA.
February 5-7, 2007. Suzek,
B., Freimuth, R., Mungal, S. A., McConnell, P., Kurc, T., and Frey, L. grid-PIR caBIG Annual Conference. Crystal City, VA.
February 5-7, 2007. Kurc,
T., Freimuth, R., Mungal, S. A., McConnell, P., Suzek, B., and Frey,
L. Making Data Avail Thru Interfaces caBIG Annual Conference. Crystal City, VA.
February 5-7, 2007. Bondy,
J., Courtney, P., Derr L., Mungal, S. A., and Reeves, D. caBIGTM Mentoring 2007
caBIG Annual Conference. Crystal City, VA. February 5-7, 2007. Reeves,
D., Chilli, J., Curtis, T., Freimuth, R., Frey, L., Liefeld, T., Mungal,
S. A., Schmandt, l., Suzek, B., Wolfe, C., and Komatsoulis, G. Metadata
Reuse caBIG
Annual Conference. Crystal City, VA. February 5-7, 2007. Mungal,
S. A., McConnell,
P., Kurc, T., Osborne, J., Freimuth, R., Frey, L., Davis, B., and Cuticchia, A.J. The caBIG VCDE and Architecture Silver
Level Criteria caBIG Annual Conference. Crystal City, VA.
February 5-7, 2007. Mungal, S., Peedin, M., Haney,
R. P., and McConnell, P. Ontology in use on the Cancer Biomedical
Informatics Grid (caBIG) Bridging Knowledge Gaps in Computational
Biology. Cary, NC. September 2005. Blondin, P., P. W. Farin, S. A. Mungal,
A. E. Crosier, J. E. Alexander, and C. E. Farin. (1999). Does
in vitro culture affect the expression of insulin-like growth factor-II (IGF-II)
messenger RNA in fetal bovine liver? Biol.
Reprod. 60 (Suppl. 1):248 (Abstr.). Mungal, S. A., Farin, C. E., and
Farin, P. W. (1997). Competitive
RT-PCR for Quantitation of Bovine IGF-I mRNA in Cumulus Oocyte Complexes
and Fetal Liver
Theriogenology
47:217. Farin,
C. E., Farin, P. W., Mungal, S. A. (1997). Maternal
Insulin-like Growth Factor-I (IGF-I) and Development of In Vivo- and In
Vitro-Derived
Bovine Fetuses
Theriogenology
47:318. Farin, P. W., Farin, C. E., Mungal, S.
A. (1997). Measurements
of Bovine Fetuses and Placentas at 63 Days after Transfer of Embryos Produced
In Vivo or In Vitro Theriogenology
47:319. Mungal, S. A., Farin, C. E., and
Farin, P. W. Competitive
RT-PCR for Quantitation of Bovine IGF-I mRNA in Cumulus Oocyte Complexes and
Fetal Liver Seminar presentation at NCSU. Raleigh, NC.
September 1996 Siadat-Pajouh, M., Ayscue, A.H., Mungal,
S.A., Walton, L., Van Lee, L., and Herman, B. Quantitative
Detection of High Risk (HPV) Sequences in Cervical Smears at the Cellular
Level 85th
Annual meeting of the American Association for Cancer Research (AACR). April
10 - 13, 1994. San
Francisco, California. Siadat-Pajouh,
M., Ayscue, A.H., Mungal, S.A., Periasamy, A., Walton, L., Van Lee,
L., Lockett, S.J., and Herman, B. Introduction
of a Sensitive and Quantitative Fluorescent Based In Situ
Hybridization Technique to Detect High Risk HPV Sequences in Cervical Smears
and Cell Lines 12th
Annual Papillomavirus Conference. Sept. 26 - Oct. 1. 1993. Baltimore,
Maryland. Mungal, S.A., Steinberg, B. and
Taichman, L. Replication
of Plasmid-Derived Human Papillomavirus Type 11 DNA in Cultured Human
Keratinocytes Seminar
presentation at UNC @ Chapel Hill. NC. June 1993. Berend, KR., Boyle, TJ., DiMaio,
JM., Mungal, SA., Jung, J. Desrosiers, RC. and Lyerly, HK. Herpes
Saimiri Transformation of Human Cytotoxic T Lymphocytes 1993
Annual Meeting, The Society of Surgical Oncology. March 17-21, 1993 Mungal, S.A., Steinberg, B. and
Taichman, L. Replication
of Plasmid-Derived Human Papillomavirus Type 11 DNA in Cultured Human
Keratinocytes June
1992 Seminar presentation at Burroughs Wellcome. RTP, NC. Mungal, S.A., Steinberg, B. and
Taichman, L. Replication
of Plasmid-Derived Human Papillomavirus Type 11 DNA in Cultured Human
Keratinocytes May
1992 Seminar presentation at SUNY @ Stony Brook. NY. Mungal, S.A., Shelness, G.S.,
Newman, T.C., Sorci-Thomas, M., Rudell, L.L., and Williams, D.L. Transcription
of the Monkey Apo E Gene 1985
Annual Meeting, The American Heart Association 58th Scientific Sessions. Washington, D.C. Poster Presentations: Barry
W. T., McConnell, P., Chen, W., Annechiarico, R., and Mungal, S. Upgrading RProteomics on the Cancer
Bioinformatics Grid (caBIG®) AMIA. March 2012. San Francisco, CA. Mungal,
S., Walker,
M., Kong, D. F., Wilgus, R., Pinchotti, D., Tcheng, J. E., Barry W.
T., and McCourt, B. Representing Multiple Standards in a Single
DAM: Use of Atomic Classes AMIA. March 2012. San Francisco, CA. Mungal,
S., Cooper,
M., Ohira, R., Reeves, D., Sharma, M., Wilkins, L., Davis, B. and Barry
W. T. How to interoperate with the Address
standards using SAIF National
Cancer Institute Cancer Biomedical Informatics Grid Annual Meeting,
Washington, DC. Sept. 2010. Nagarajan,
R., Freimuth R., Mungal S., Wilkens, L., Oster S., Wilkens L., Suzek,
B., Frey, L., Hastings, S., Buntrock, J., Stancl, C., Tuner, S., Davis, B.,
Wright, L., and Hartel, F. caBIG
Gold Level Compatibility Guidelines National
Cancer Institute Cancer Biomedical Informatics Grid Annual Meeting,
Washington, DC. July 2009. Mungal,
S., McConnell,
P., Chen, W., Annechiarico, R. and Barry W. T. RProteomics on the Cancer Bioinformatics
Grid (caBIG®) caBIG-NCRI Joint Conference. September
2009. London, UK. Mungal,
S.,
Cooper, M., Dobratz, K., Smith, D., Stafford, G., Wilkens, L., and Cuticchia,
A. J. CDE Standard Submission Requirements:
Criteria and Process National
Cancer Institute Cancer Biomedical Informatics Grid Annual Meeting,
Washington, DC. June 2008. Mungal,
S. A.,
McConnell, P., Agarwal, P., and Cuticchia, A. J. Vocabularies/Terminologies and Ontologies
in caBIGTM: New Cancer
Research Tools Duke Comprehensive Cancer Center Annual
Conference. March 2007. Durham, NC. Mungal,
S. A.,
McConnell, P., Haney, R. P., Peedin, M., Agarwal, P., and Cuticchia, A. J. RProteomics and caBIGTM: New Cancer
Research Tools Duke Comprehensive Cancer Center Annual
Conference. March 2007. Durham, NC. Mungal,
S. A., Freimuth,
R., Frey, L., and Davis, B. The caBIG™ VCDE Silver Level Criteria caBIG Annual Conference. April 2007.
Crystal City, VA McConnell, P.,
Haney, R.P., Mungal, S. A., Peedin, M., Agarwal, P., Cuticchia, A. J., Fenstermacher,
D., Sellers, K., Street, C., McWeeney, S., Rajaraman, V., Ladera,. T., Lin,
S. M., and Borchers, C. RProteomics: An Application for Analyzing
Mass Spectrometry Proteomics Data caBIG Annual Conference. April 2006.
Washington, DC. Mungal, S., Haney, R. P.,
Peedin, M., Lin, S. M., and McConnell, P. RProteomics on the Cancer Bioinformatics
Grid (caBIG) Bridging Knowledge Gaps in Computational
Biology. September 2005. Cary, NC. Mungal, S., Haney, R. P.,
Peedin, M., Lin, S. M., and McConnell, P. RProteomics on the Cancer Biomedical
Informatics Grid (caBIG) Bridging Knowledge Gaps in Computational
Biology. September 2005. Cary, NC. Haney, R. P.,
Peedin, M., Mungal, S. A., and McConnell, P. R, SAS, and MATLAB Interoperability: Formal
Algebraic Models and Practical Aspects Bridging Knowledge Gaps in Computational
Biology. September 2005. Cary, NC. Haney, RP, Parker,
C, Lin, S. M., McConnell, P, Mungal, SA, and Borchers, C. Statistical Analysis of Quantitation Data PPNL, Annual Meeting 2005. Mungal,
S. A.,
Haney R. P., Peedin, M., Lin, S. M., and McConnell. P. caBIG and RProteomics Duke Frontiers Symposium, June 2005.
Durham, NC. Haney, R. P.,
Parker, C., Lin, S. M., McConnell, P., Mungal, S. A., and Borchers. C.
Protein Quantitation using an Integrated
Statistical Analysis Pipeline 53rd Annual ASMS Conference. May 2005. San
Antonio, TX. Blondin, P., Farin , C. E., Farin, P. W., Mungal,
S.A. (1998). Effect
of In Vitro Culture on Insulin-like Growth Factor-II (IGF-II)
messenger RNA in Fetal
Bovine Liver SSR
Annual Meeting, 1998. Mungal, S. A., Farin, C. E., and
Farin, P. W. Competitive
RT-PCR for Quantitation of Bovine IGF-I mRNA in Cumulus Oocyte Complexes
and Fetal Liver Annual
Triangle Reproductive Physiology Symposia. January, 1997. Seminar
presentation at UNC @ Chapel Hill. NC. Siadat-Pajouh, M., Ayscue, A.H., Mungal,
S.A., Walton, L., Van Lee, L., and Herman, B. Quantitative
Detection of High Risk Human Papillomavirus (HPV) in Cervical Smears at
the
Cellular Level AACR.
April 10-13, 1994. San Francisco, California Siadat-Pajouh, M., Ayscue, A.H., Mungal,
S.A., Periasamy, A., Walton, L., Van Lee, L., Lockett, S.J.,
and Herman, B. Introduction
of a Sensitive and Quantitative Fluorescent Based In Situ Hybridization
Technique
to Detect High Risk HPV Sequences in Cervical Smears and Cell Lines 12th
Annual Papillomavirus Conference. Sept. 26- Oct. 1. 1993. Baltimore,
Maryland. Liang, X.H., Ayscue, A.H., Mungal,
S.A., Hockenbery, D., Lockett, S.J., and Herman, B. Bcl-2
Proto-oncogene Expression in Cervical Carcinoma Cell Lines 12th
Annual Papillomavirus Conference. Sept. 26- Oct. 1. 1993. Baltimore,
Maryland. Via, DF, DiMaio JM, Mungal SA,
Berend KR, Jordan PB, Lyerly HK. A
Truncated Carcinoembryonic Antigen (CEA) Promoter Allows Tissue Specific Retro-Viral-Mediated
Gene Expression in CEA Expressing Tumor Cells
Annual Meeting of the International College of Surgeons, 1993. Via, D.F., DiMaio, J.M., Mungal,
S.A., Berend, K.R., Pappas, T.N., and Lyerly, H.K. Gene
Therapy for Pancreatic Carcinoma. 1993
Annual Meeting, Duke Comprehensive Cancer Center. March 20th, 1993.
Durham, NC DiMaio, J.M., Berend, K.R., Boyle, T.J.,
Via, D.F., Mungal, S.A., Lyerly, H.K. Growth
Transformation of Human Antigen Specific Cytotoxic T Lymphocytes
The American College of Surgeons Annual Scientific Meeting 1993 DiMaio, J. M., Mungal, S. A.,
Berend, K.B., Bradford, W. D., Buckley, R.H., Borowitz, M.J., Lyerly, H.K. Epstein-Barr
Virus Latent Gene Expression in B Cell Tumors in Immunosuppressed Patients The
American Society of Transplant Surgeon's Nineteenth Scientific Meeting. May,
1993. Taichman,
L., Steinberg, B., Auborn, K. and Mungal, S.A. Episomal
Replication of Plasmid-Derived HPV11 DNA in Primary Keratinocytes in Culture. 11th International Papillomavirus Workshop. Sept.
5-11. 1992. Edinburg, Scotland, pg. 333 bk. of abstracts. References: References will be provided upon request. Page
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